Transcript: lnc-ADAM10-1:1

Basic information

LNCipedia transcript ID: lnc-ADAM10-1:1 
LNCipedia gene ID: lnc-ADAM10-1
Location (hg38): chr15:58768074-58770974
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1394 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000500929; TCONS_00023279
Alternative gene names: ENSG00000245975; XLOC_011488; linc-ADAM10-1; AC090515.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.4377 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADAM10-1:1 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADAM10-1:1
3.1 lnc-ADAM10-1:1
4.0 lnc-ADAM10-1:1
4.1 lnc-ADAM10-1:1
5.0 lnc-ADAM10-1:1
5.1 lnc-ICE2-40:2
5.2 lnc-ADAM10-1:1