Transcript: lnc-ADA-3:2

Basic information

LNCipedia transcript ID: lnc-ADA-3:2 
HGNC Gene Symbol: lnc-ADA-3    
HGNC Full Gene Name: KCNK15 and WISP2 antisense RNA 1
Ensembl Gene ID: ENSG00000244558
Ensembl Transcript ID: ENST00000445420
Location (hg38): chr20:44695202-44745995
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 452 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445420.1; RP11-445H22.4-003; OTTHUMT00000079381.1; NONHSAT079909; ENST00000445420.5
Alternative gene names: ENSG00000244558.1; RP11-445H22.4; OTTHUMG00000032545.1; ENSG00000244558.5; KCNK15-AS1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -191.9037 non-coding 
CPAT coding probability 9.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ADA-3:2 no no no no

Available literature

  1. Cai (2015), Long noncoding RNA CCAT2 promotes breast tumor growth by regulating the Wnt signaling pathway., Onco Targets Ther
  2. Wang (2015), Serum LncRNAs Profiles Serve as Novel Potential Biomarkers for the Diagnosis of HBV-Positive Hepatocellular Carcinoma., PLoS ONE
  3. Xu (2015), Clinical significance of high expression of circulating serum lncRNA RP11-445H22.4 in breast cancer patients: a Chinese population-based study., Tumour Biol.
  4. Xing (2014), Identification of long noncoding RNA associated with osteoarthritis in humans., Orthop Surg

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADA-1:2
4.0 lnc-ADA-3:2
4.1 lnc-ADA-3:2
5.0 lnc-ADA-3:2
5.1 lnc-MATN4-24:3
5.2 lnc-ADA-3:2