Transcript: lnc-ACTRT3-3:1

Basic information

LNCipedia transcript ID: lnc-ACTRT3-3:1 
LNCipedia gene ID: lnc-ACTRT3-3
Ensembl Gene ID: ENSG00000269984
Ensembl Transcript ID: ENST00000602342
Location (hg38): chr3:169777192-169780334
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3143 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT093155; ENST00000602342.1
Alternative gene names: ENSG00000269984.1; RP11-362K14.5; AC078795.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 66.0023 coding 
CPAT coding probability 20.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ACTRT3-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC078802.1-3:1
4.0 lnc-AC078802.1-3:1
4.1 lnc-AC078802.1-3:1
5.0 lnc-AC078802.1-3:1
5.1 lnc-TBL1XR1-58:1
5.2 lnc-ACTRT3-3:1