Transcript: lnc-ACSS1-1:2

Basic information

LNCipedia transcript ID: lnc-ACSS1-1:2 
LNCipedia gene ID: lnc-ACSS1-1
Ensembl Gene ID: ENSG00000275358
Ensembl Transcript ID: ENST00000613001
Location (hg38): chr20:25062962-25063591
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 630 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000613001.1
Alternative gene names: ENSG00000275358.1; RP5-1025A1.3; AL080312.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.5267 non-coding 
CPAT coding probability 4.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACSS1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ACSS1-1:2
4.1 lnc-ACSS1-1:2
5.0 lnc-ACSS1-1:2
5.1 lnc-CST4-41:2
5.2 lnc-ACSS1-1:2