Transcript: lnc-ACP1-9:3

Basic information

LNCipedia transcript ID: lnc-ACP1-9:3 
LNCipedia gene ID: lnc-ACP1-9
Ensembl Gene ID: ENSG00000233633
Ensembl Transcript ID: ENST00000444079
Location (hg38): chr2:558204-578145
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 762 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002792; ENST00000444079; ENST00000444079.1; AC093326.3-001; OTTHUMT00000322385.1; NONHSAT068566
Alternative gene names: XLOC_001308; linc-SNTG2-4; ENSG00000233633; AC093326.3; ENSG00000233633.1; OTTHUMG00000151360.1; AC093326.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.4282 non-coding 
CPAT coding probability 1.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACP1-9:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACP1-8:3
3.1 lnc-ACP1-9:3
4.0 lnc-ACP1-9:3
4.1 lnc-ACP1-9:3
5.0 lnc-ACP1-9:3
5.1 lnc-SNX17-294:11
5.2 lnc-ACP1-9:3