Transcript: lnc-ACP1-4:1

Basic information

LNCipedia transcript ID: lnc-ACP1-4:1 
LNCipedia gene ID: lnc-ACP1-4
Ensembl Gene ID: ENSG00000236856
Ensembl Transcript ID: ENST00000431911
Location (hg38): chr2:388412-416885
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 549 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002788; ENST00000431911; ENST00000431911.1; AC105393.1-001; OTTHUMT00000322402.1; NONHSAT068546
Alternative gene names: XLOC_001303; linc-SNTG2-9; ENSG00000236856; AC105393.1; ENSG00000236856.1; OTTHUMG00000151367.1; AC105393.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.6952 non-coding 
CPAT coding probability 40.23% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ACP1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACP1-3:1
3.1 lnc-ACP1-4:1
4.0 lnc-ACP1-4:1
4.1 lnc-ACP1-4:1
5.0 lnc-ACP1-4:1
5.1 lnc-SNX17-301:1
5.2 lnc-ACP1-4:1