Transcript: lnc-ACKR3-1:4

Basic information

LNCipedia transcript ID: lnc-ACKR3-1:4 
LNCipedia gene ID: lnc-ACKR3-1
Ensembl Gene ID: ENSG00000232328
Ensembl Transcript ID: ENST00000413385
Location (hg38): chr2:236752774-236754363
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 880 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003131; ENST00000413385; ENST00000413385.1; AC011286.1-002; OTTHUMT00000329068.1; NONHSAT077615
Alternative gene names: XLOC_001906; linc-COPS8; ENSG00000232328; AC011286.1; ENSG00000232328.1; OTTHUMG00000153025.1; AC084030.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.2799 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACKR3-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXCR7-1:2
3.1 lnc-CXCR7-1:2
4.0 lnc-CXCR7-1:2
4.1 lnc-CXCR7-1:2
5.0 lnc-CXCR7-1:2
5.1 lnc-ACKR3-1:2
5.2 lnc-ACKR3-1:4