Transcript: lnc-ACHE-1:6

Basic information

LNCipedia transcript ID: lnc-ACHE-1:6 
LNCipedia gene ID: lnc-ACHE-1
Ensembl Gene ID: ENSG00000227053
Ensembl Transcript ID: ENST00000448513
Location (hg38): chr7:101014325-101017601
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 372 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000448513.1; RP11-395B7.4-002; OTTHUMT00000347203.1; NONHSAT122436
Alternative gene names: ENSG00000227053.1; RP11-395B7.4; OTTHUMG00000157034.1; AC105446.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.3624 non-coding 
CPAT coding probability 27.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACHE-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VGF-1:2
4.0 lnc-VGF-1:2
4.1 lnc-VGF-1:2
5.0 lnc-VGF-1:2
5.1 lnc-VGF-8:3
5.2 lnc-ACHE-1:6