Transcript: lnc-ACBD6-4:1

Basic information

LNCipedia transcript ID: lnc-ACBD6-4:1 
LNCipedia gene ID: lnc-ACBD6-4
Ensembl Gene ID: ENSG00000261817
Ensembl Transcript ID: ENST00000566904
Location (hg38): chr1:180117140-180123890
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 506 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566904.1; RP11-502H18.2-001; OTTHUMT00000085282.1; NONHSAT008239
Alternative gene names: ENSG00000261817.1; RP11-502H18.2; OTTHUMG00000035251.1; AL390718.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.209 non-coding 
CPAT coding probability 16.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACBD6-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACBD6-4:1
4.0 lnc-ACBD6-4:1
4.1 lnc-ACBD6-4:1
5.0 lnc-ACBD6-4:1
5.1 lnc-SH2D1B-187:1
5.2 lnc-ACBD6-4:1