Transcript: lnc-ACAA1-1:1

Basic information

LNCipedia transcript ID: lnc-ACAA1-1:1 
LNCipedia gene ID: lnc-ACAA1-1
Location (hg38): chr3:38103129-38123083
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 964 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000451419.1; AP006309.4-001; OTTHUMT00000342609.1; NONHSAT089051
Alternative gene names: ENSG00000239685.1; AP006309.4; OTTHUMG00000155978.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.0359 non-coding 
CPAT coding probability 2.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ACAA1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACAA1-1:1
4.0 lnc-ACAA1-1:1
4.1 lnc-ACAA1-1:1
5.0 lnc-ACAA1-1:1
5.1 lnc-SEC22C-42:2
5.2 lnc-ACAA1-1:1