Transcript: lnc-ABCA5-2:2

Basic information

LNCipedia transcript ID: lnc-ABCA5-2:2 
LNCipedia gene ID: lnc-ABCA5-2
Ensembl Gene ID: ENSG00000230258
Ensembl Transcript ID: ENST00000587325
Location (hg38): chr17:70018111-70073282
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 725 bp
Exons: 7
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT055608; ENST00000587325.1
Alternative gene names: ENSG00000230258.2; AC002539.1; ENSG00000230258.6; AC005208.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.4349 non-coding 
CPAT coding probability 2.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCA5-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ABCA5-2:2
4.0 lnc-ABCA5-2:2
4.1 lnc-ABCA5-2:2
5.0 lnc-ABCA5-2:2
5.1 lnc-GRB2-67:2
5.2 lnc-ABCA5-2:2