Transcript: lnc-ABCA13-1:3

Basic information

LNCipedia transcript ID: lnc-ABCA13-1:3 
LNCipedia gene ID: lnc-ABCA13-1
Location (hg38): chr7:48708515-48711601
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 754 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000092260.1|HBMT00001311661.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 3.6297 non-coding 
CPAT coding probability 1.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCA13-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ABCA13-1:3
5.0 lnc-ABCA13-1:3
5.1 lnc-CCT6A-99:2
5.2 lnc-ABCA13-1:3