Transcript: lnc-ABCA1-8:4

Basic information

LNCipedia transcript ID: lnc-ABCA1-8:4 
LNCipedia gene ID: lnc-ABCA1-8
Location (hg38): chr9:105194867-105245593
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5013 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000109338.1|MICT00000364171.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.5761 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ABCA1-8:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ABCA1-8:4
5.0 lnc-ABCA1-8:4
5.1 lnc-ERP44-54:3
5.2 lnc-ABCA1-8:4