Transcript: lnc-AATK-5:2

Basic information

LNCipedia transcript ID: lnc-AATK-5:2 
LNCipedia gene ID: lnc-AATK-5
Location (hg38): chr17:80999518-81000127
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 286 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000577061.1; CTD-2561B21.7-002; OTTHUMT00000438275.1; NONHSAT056417
Alternative gene names: ENSG00000263218.1; CTD-2561B21.7; OTTHUMG00000177658.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.573 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AATK-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC127496.3-4:2
4.0 lnc-AC127496.3-4:2
4.1 lnc-AC127496.3-4:2
5.0 lnc-AC127496.3-4:2
5.1 lnc-NPLOC4-27:2
5.2 lnc-AATK-5:2