Transcript: lnc-AARSD1-2:8

Basic information

LNCipedia transcript ID: lnc-AARSD1-2:8 
LNCipedia gene ID: lnc-AARSD1-2
Location (hg38): chr17:42975689-42977275
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1587 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT053799; ENST00000587526.1
Alternative gene names: ENSG00000267230.1; RP11-376M2.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.3794 non-coding 
CPAT coding probability 2.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AARSD1-2:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VAT1-2:1
4.0 lnc-VAT1-2:1
4.1 lnc-VAT1-2:1
5.0 lnc-VAT1-2:1
5.1 lnc-BRCA1-5:1
5.2 lnc-AARSD1-2:8