Transcript: lnc-AAGAB-1:36

Basic information

LNCipedia transcript ID: lnc-AAGAB-1:36 
LNCipedia gene ID: lnc-AAGAB-1
Location (hg38): chr15:66986365-67000990
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 416 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000558097.1; RP11-798K3.2-001; OTTHUMT00000417455.1; NONHSAT046831
Alternative gene names: ENSG00000259347.1; RP11-798K3.2; OTTHUMG00000172243.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.3475 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AAGAB-1:36 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-342M21.2.1-1:2
4.0 lnc-RP11-342M21.2.1-1:2
4.1 lnc-RP11-342M21.2.1-1:2
5.0 lnc-RP11-342M21.2.1-1:2
5.1 lnc-AAGAB-1:15
5.2 lnc-AAGAB-1:36