Transcript: ZNF436-AS1:3

Basic information

LNCipedia transcript ID: ZNF436-AS1:3 
LNCipedia gene ID: ZNF436-AS1
Location (hg38): chr1:23369218-23371837
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 692 bp
Exons: 3
Sources: Refseq - Dec 2014
Alternative transcript names: NR_033691
Alternative gene names: FLJ90508


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -184.4865 non-coding 
CPAT coding probability 18.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZNF436-AS1:3 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf213-1:3
4.0 ZNF436-AS1:3
4.1 ZNF436-AS1:3
5.0 ZNF436-AS1:3
5.1 ZNF436-AS1:3
5.2 ZNF436-AS1:3