Transcript: ZKSCAN2-DT:13

Basic information

LNCipedia transcript ID: ZKSCAN2-DT:13 
LNCipedia gene ID: ZKSCAN2-DT
Location (hg38): chr16:25257590-25287142
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 10362 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000026947.1|ENCT00000157451.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 4.3145 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZKSCAN2-DT:13 no no no no

Available literature

  1. Wen (2018), Up-regulation of CTD-2547G23.4 in hepatocellular carcinoma tissues and its prospective molecular regulatory mechanism: a novel qRT-PCR and bioinformatics analysis study., Cancer Cell Int.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AQP8-2:5
5.0 lnc-AQP8-2:5
5.1 ZKSCAN2-DT:5
5.2 ZKSCAN2-DT:13