Transcript: ZFAS1:14

Basic information

LNCipedia transcript ID: ZFAS1:14 
LNCipedia gene ID: ZFAS1
Location (hg38): chr20:49278642-49289256
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 767 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT080211
Alternative gene names: HSUP1; HSUP2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -28.5517 non-coding 
CPAT coding probability 4.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ZFAS1:14 no no no no

Available literature

  1. Thorenoor (2016), Long non-coding RNA ZFAS1 interacts with CDK1 and is involved in p53-dependent cell cycle control and apoptosis in colorectal cancer., Oncotarget
  2. Zhang (2016), Long non-coding RNA chromogenic in situ hybridisation signal pattern correlation with breast tumour pathology., J. Clin. Pathol.
  3. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  4. Na (2015), Long non-coding RNA UCA1 contributes to the progression of prostate cancer and regulates proliferation through KLF4-KRT6/13 signaling pathway., Int J Clin Exp Med
  5. Pei (2015), Notch-1 promotes breast cancer cells proliferation by regulating LncRNA GAS5., Int J Clin Exp Med
  6. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget
  7. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.
  8. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
  9. Askarian-Amiri (2011), SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer., RNA
  10. Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DDX27-1:12
4.0 ZFAS1:14
4.1 ZFAS1:14
5.0 ZFAS1:14
5.1 ZFAS1:14
5.2 ZFAS1:14

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