Transcript: ZFAS1:13

Basic information

LNCipedia transcript ID: ZFAS1:13 
HGNC Gene Symbol: ZFAS1    
HGNC Full Gene Name: ZNFX1 antisense RNA 1
Ensembl Gene ID: ENSG00000177410
Ensembl Transcript ID: ENST00000428008
Location (hg38): chr20:49278642-49289260
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 566 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428008; ENST00000428008.1; ZNFX1-AS1-006; OTTHUMT00000127851.1; NONHSAT080212; ENST00000428008.5
Alternative gene names: ENSG00000177410; ZNFX1-AS1; ENSG00000177410.8; OTTHUMG00000032698.3; ZFAS1; ENSG00000177410.12; HSUP1; HSUP2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -50.4695 non-coding 
CPAT coding probability 4.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ZFAS1:13 no no no no

Available literature

  1. Thorenoor (2016), Long non-coding RNA ZFAS1 interacts with CDK1 and is involved in p53-dependent cell cycle control and apoptosis in colorectal cancer., Oncotarget
  2. Zhang (2016), Long non-coding RNA chromogenic in situ hybridisation signal pattern correlation with breast tumour pathology., J. Clin. Pathol.
  3. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  4. Na (2015), Long non-coding RNA UCA1 contributes to the progression of prostate cancer and regulates proliferation through KLF4-KRT6/13 signaling pathway., Int J Clin Exp Med
  5. Pei (2015), Notch-1 promotes breast cancer cells proliferation by regulating LncRNA GAS5., Int J Clin Exp Med
  6. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget
  7. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.
  8. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
  9. Askarian-Amiri (2011), SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer., RNA
  10. Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DDX27-1:7
3.1 lnc-DDX27-1:6
4.0 ZFAS1:13
4.1 ZFAS1:13
5.0 ZFAS1:13
5.1 ZFAS1:13
5.2 ZFAS1:13

loading