Transcript: ZEB2-AS1:28

Basic information

LNCipedia transcript ID: ZEB2-AS1:28 
LNCipedia gene ID: ZEB2-AS1
Location (hg38): chr2:144519411-144520381
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 384 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000238057.4|ENST00000609819.1
Alternative gene names: ZEB2NAT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -25.1924 non-coding 
CPAT coding probability 5.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZEB2-AS1:28 yes no no no

Available literature

  1. Zhuang (2015), TGFβ1 secreted by cancer-associated fibroblasts induces epithelial-mesenchymal transition of bladder cancer cells through lncRNA-ZEB2NAT., Sci Rep
  2. Beltran (2008), A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition., Genes Dev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 ZEB2-AS1:28
5.0 ZEB2-AS1:28
5.1 ZEB2-AS1:28
5.2 ZEB2-AS1:28