Transcript: ZEB2-AS1:14

Basic information

LNCipedia transcript ID: ZEB2-AS1:14 
LNCipedia gene ID: ZEB2-AS1
RefSeq ID: NR_040248
Location (hg38): chr2:144519614-144520899
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 430 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000428623.1; ZEB2-AS1-002; OTTHUMT00000332825.1; NONHSAT074777; NR_040248.2
Alternative gene names: ENSG00000238057.2; ZEB2-AS1; OTTHUMG00000153879.2; ENSG00000238057.4; ZEB2NAT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.1924 non-coding 
CPAT coding probability 8.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZEB2-AS1:14 yes no no no

Available literature

  1. Zhuang (2015), TGFβ1 secreted by cancer-associated fibroblasts induces epithelial-mesenchymal transition of bladder cancer cells through lncRNA-ZEB2NAT., Sci Rep
  2. Beltran (2008), A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition., Genes Dev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGAP15-3:2
4.0 ZEB2-AS1:14
4.1 ZEB2-AS1:14
5.0 ZEB2-AS1:14
5.1 ZEB2-AS1:14
5.2 ZEB2-AS1:14