Transcript: XXYLT1-AS2:1

Basic information

LNCipedia transcript ID: XXYLT1-AS2:1 
HGNC Gene Symbol: XXYLT1-AS2    
HGNC Full Gene Name: XXYLT1 antisense RNA 2
Ensembl Gene ID: ENSG00000230266
Ensembl Transcript ID: ENST00000447975
Location (hg38): chr3:195147871-195152790
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 784 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447975.1; XXYLT1-AS2-001; OTTHUMT00000342303.1
Alternative gene names: ENSG00000230266.1; XXYLT1-AS2; OTTHUMG00000155916.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.5858 non-coding 
CPAT coding probability 2.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
XXYLT1-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM43A-11:1
4.0 XXYLT1-AS2:1
4.1 XXYLT1-AS2:1
5.0 XXYLT1-AS2:1
5.1 XXYLT1-AS2:1
5.2 XXYLT1-AS2:1