Transcript: WASIR2:4

Basic information

LNCipedia transcript ID: WASIR2:4 
LNCipedia gene ID: WASIR2
Location (hg38): chr16:22910-25123
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1080 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000329244.5; WASIR2-201; NONHSAT051730
Alternative gene names: ENSG00000231439.3; WASIR2; OTTHUMG00000060721.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 64.011 coding 
CPAT coding probability 96.84% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
WASIR2:4 no no no no

Available literature

  1. Daniels (2001), Sequence, structure and pathology of the fully annotated terminal 2 Mb of the short arm of human chromosome 16., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNRNP25-1:3
4.0 WASIR2:4
4.1 WASIR2:4
5.0 WASIR2:4
5.1 WASIR2:4
5.2 WASIR2:4