Transcript: VIM-AS1:1

Basic information

LNCipedia transcript ID: VIM-AS1:1 
HGNC Gene Symbol: VIM-AS1    
HGNC Full Gene Name: VIM antisense RNA 1
Ensembl Gene ID: ENSG00000229124
Ensembl Transcript ID: ENST00000605833
Location (hg38): chr10:17215196-17229985
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 918 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT139958; ENST00000605833.1
Alternative gene names: ENSG00000229124.2; VIM-AS1; ENSG00000229124.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 95.8027 coding 
CPAT coding probability 73.85% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
VIM-AS1:1 no no no no

Available literature

  1. Rezanejad Bardaji (2018), Long noncoding RNA VIM-AS1 promotes colorectal cancer progression and metastasis by inducing EMT., Eur. J. Cell Biol.
  2. Sun (2017), Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRDMT1-1:3
4.0 VIM-AS1:1
4.1 VIM-AS1:1
5.0 VIM-AS1:1
5.1 VIM-AS1:1
5.2 VIM-AS1:1