Transcript: VAV3-AS1:16

Basic information

LNCipedia transcript ID: VAV3-AS1:16 
LNCipedia gene ID: VAV3-AS1
Location (hg38): chr1:108050420-108052354
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 360 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001088; NONHSAT004973
Alternative gene names: XLOC_000332; linc-NBPF6-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.598 non-coding 
CPAT coding probability 4.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VAV3-AS1:16 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NBPF6-2:1
3.1 lnc-NBPF6-4:1
4.0 lnc-NBPF6-3:7
4.1 VAV3-AS1:16
5.0 VAV3-AS1:16
5.1 VAV3-AS1:16
5.2 VAV3-AS1:16