Transcript: VAV3-AS1:15

Basic information

LNCipedia transcript ID: VAV3-AS1:15 
LNCipedia gene ID: VAV3-AS1
Location (hg38): chr1:108050419-108052354
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 362 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT004972; FPKM1_group_1171_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.598 non-coding 
CPAT coding probability 3.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VAV3-AS1:15 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBPF6-4:2
4.0 lnc-NBPF6-3:6
4.1 VAV3-AS1:15
5.0 VAV3-AS1:15
5.1 VAV3-AS1:15
5.2 VAV3-AS1:15