Transcript: VAV3-AS1:12

Basic information

LNCipedia transcript ID: VAV3-AS1:12 
LNCipedia gene ID: VAV3-AS1
Location (hg38): chr1:108050328-108052441
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 539 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226822.1|HBMT00000023407.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -88.2117 non-coding 
CPAT coding probability 4.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VAV3-AS1:12 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 VAV3-AS1:12
5.0 VAV3-AS1:12
5.1 VAV3-AS1:12
5.2 VAV3-AS1:12