Transcript: VAV3-AS1:1

Basic information

LNCipedia transcript ID: VAV3-AS1:1 
HGNC Gene Symbol: VAV3-AS1    
HGNC Full Gene Name: VAV3 antisense RNA 1
Ensembl Gene ID: ENSG00000230489
Ensembl Transcript ID: ENST00000438318
RefSeq ID: NR_046653
Location (hg38): chr1:107964443-107994607
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 619 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000438318.1; VAV3-AS1-001; OTTHUMT00000030241.1; NONHSAT004970; NR_046653; NR_046653.1
Alternative gene names: ENSG00000230489.1; VAV3-AS1; OTTHUMG00000010994.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -231.2844 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VAV3-AS1:1 yes no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBPF6-5:1
4.0 VAV3-AS1:1
4.1 VAV3-AS1:1
5.0 VAV3-AS1:1
5.1 VAV3-AS1:1
5.2 VAV3-AS1:1