Transcript: TTTY21:4

Basic information

LNCipedia transcript ID: TTTY21:4 
HGNC Gene Symbol: TTTY21    
HGNC Full Gene Name: testis-specific transcript, Y-linked 21
Ensembl Gene ID: ENSG00000228890
Ensembl Transcript ID: ENST00000430228
RefSeq ID: NR_001535
Location (hg38): chrY:9717653-9721296
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 307 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017587; ENST00000430228; ENST00000430228.1; TTTY21-001; OTTHUMT00000106566.1; NONHSAT139424; NR_001535; NR_003588; NR_001535.1
Alternative gene names: XLOC_008320; linc-AMELY-9; ENSG00000228890; TTTY21; ENSG00000228890.1; OTTHUMG00000046232.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTTY21:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC006156.1-2:1
3.1 lnc-AC006156.1-3:1
4.0 lnc-AC006156.1-3:1
4.1 lnc-AC006156.1-3:1
5.0 lnc-AC006156.1-3:1
5.1 TTTY21:2
5.2 TTTY21:4