Transcript: TTTY20:1

Basic information

LNCipedia transcript ID: TTTY20:1 
HGNC Gene Symbol: TTTY20    
HGNC Full Gene Name: testis-specific transcript, Y-linked 20
Ensembl Gene ID: ENSG00000232808
Ensembl Transcript ID: ENST00000434487
RefSeq ID: NR_001546
Location (hg38): chrY:9329880-9334832
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 259 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000434487.1; TTTY20-001; OTTHUMT00000099510.1; NONHSAT139406; NR_001546; NR_001546.1
Alternative gene names: ENSG00000232808.1; TTTY20; OTTHUMG00000041537.1; NCRNA00145


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.9301 non-coding 
CPAT coding probability 4.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTTY20:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006156.2-4:1
4.0 TTTY20:1
4.1 TTTY20:1
5.0 TTTY20:1
5.1 TTTY20:1
5.2 TTTY20:1