Transcript: TTC39A-AS1:2

Basic information

LNCipedia transcript ID: TTC39A-AS1:2 
HGNC Gene Symbol: TTC39A-AS1    
HGNC Full Gene Name: TTC39A antisense RNA 1
Ensembl Gene ID: ENSG00000261664
Ensembl Transcript ID: ENST00000564479
Location (hg38): chr1:51329654-51335324
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 812 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564479.1; RP11-275F13.1-002; OTTHUMT00000022418.1; NONHSAT003193; ENST00000564479.5
Alternative gene names: ENSG00000261664.1; RP11-275F13.1; OTTHUMG00000008189.1; ENSG00000261664.5; TTC39A-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.7733 non-coding 
CPAT coding probability 7.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTC39A-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF11-1:1
4.0 TTC39A-AS1:2
4.1 TTC39A-AS1:2
5.0 TTC39A-AS1:2
5.1 TTC39A-AS1:2
5.2 TTC39A-AS1:2