Transcript: TRG-AS1:20

Basic information

LNCipedia transcript ID: TRG-AS1:20 
LNCipedia gene ID: TRG-AS1
Location (hg38): chr7:38341677-38374058
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1515 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000091993.1|HBMT00001310578.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -53.9905 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRG-AS1:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 TRG-AS1:20
5.0 TRG-AS1:20
5.1 TRG-AS1:20
5.2 TRG-AS1:20