Transcript: TRG-AS1:2

Basic information

LNCipedia transcript ID: TRG-AS1:2 
LNCipedia gene ID: TRG-AS1
Location (hg38): chr7:38341497-38342553
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 711 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT120178; FPKM1_group_29566_transcript_5
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6579 non-coding 
CPAT coding probability 3.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRG-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STARD3NL-1:3
4.0 TRG-AS1:2
4.1 TRG-AS1:2
5.0 TRG-AS1:2
5.1 TRG-AS1:2
5.2 TRG-AS1:2