Transcript: TRG-AS1:11

Basic information

LNCipedia transcript ID: TRG-AS1:11 
LNCipedia gene ID: TRG-AS1
Location (hg38): chr7:38331226-38354103
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 813 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000091993.1|FTMT22700000819.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -44.2109 non-coding 
CPAT coding probability 8.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRG-AS1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 TRG-AS1:11
5.0 TRG-AS1:11
5.1 TRG-AS1:11
5.2 TRG-AS1:11