Transcript: TRDN-AS1:23

Basic information

LNCipedia transcript ID: TRDN-AS1:23 
LNCipedia gene ID: TRDN-AS1
Location (hg38): chr6:123411712-123471759
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2932 bp
Exons: 8
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000587106.2
Alternative gene names: ENSG00000235535.3; RP11-532N4.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.1017 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRDN-AS1:23 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKAIN2-1:4
4.0 lnc-NKAIN2-1:4
4.1 lnc-NKAIN2-1:4
5.0 lnc-NKAIN2-1:4
5.1 TRDN-AS1:3
5.2 TRDN-AS1:23