Transcript: TRAPPC12-AS1:1

Basic information

LNCipedia transcript ID: TRAPPC12-AS1:1 
HGNC Gene Symbol: TRAPPC12-AS1    
HGNC Full Gene Name: TRAPPC12 antisense RNA 1
Ensembl Gene ID: ENSG00000225234
Ensembl Transcript ID: ENST00000453806
Location (hg38): chr2:3481242-3482409
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 908 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453806.1; TRAPPC12-AS1-001; OTTHUMT00000322627.1; NONHSAT068721
Alternative gene names: ENSG00000225234.1; TRAPPC12-AS1; OTTHUMG00000151434.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.6946 non-coding 
CPAT coding probability 9.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRAPPC12-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADI1-1:1
4.0 TRAPPC12-AS1:1
4.1 TRAPPC12-AS1:1
5.0 TRAPPC12-AS1:1
5.1 TRAPPC12-AS1:1
5.2 TRAPPC12-AS1:1