Transcript: TPT1-AS1:27

Basic information

LNCipedia transcript ID: TPT1-AS1:27 
LNCipedia gene ID: TPT1-AS1
Location (hg38): chr13:45378152-45381216
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 595 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT033590
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.4188 non-coding 
CPAT coding probability 9.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TPT1-AS1:27 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTF2F2-2:31
4.0 TPT1-AS1:27
4.1 TPT1-AS1:27
5.0 TPT1-AS1:27
5.1 TPT1-AS1:27
5.2 TPT1-AS1:27