Transcript: TNKS2-AS1:6

Basic information

LNCipedia transcript ID: TNKS2-AS1:6 
LNCipedia gene ID: TNKS2-AS1
Location (hg38): chr10:91782839-91785519
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 338 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018997; NONHSAT015636
Alternative gene names: XLOC_008905; linc-PPP1R3C;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.6475 non-coding 
CPAT coding probability 5.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TNKS2-AS1:6 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGFBP3-1:4
3.1 lnc-FGFBP3-1:4
4.0 TNKS2-AS1:6
4.1 TNKS2-AS1:6
5.0 TNKS2-AS1:6
5.1 TNKS2-AS1:6
5.2 TNKS2-AS1:6