Transcript: TMEM9B-AS1:3

Basic information

LNCipedia transcript ID: TMEM9B-AS1:3 
HGNC Gene Symbol: TMEM9B-AS1    
HGNC Full Gene Name: TMEM9B antisense RNA 1
Ensembl Gene ID: ENSG00000254860
Ensembl Transcript ID: ENST00000532599
Location (hg38): chr11:8965048-8977472
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 615 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000532599.1; TMEM9B-AS1-002; OTTHUMT00000385727.1; NONHSAT017897; ENST00000532599.5
Alternative gene names: ENSG00000254860.1; TMEM9B-AS1; OTTHUMG00000165677.1; ENSG00000254860.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.2782 non-coding 
CPAT coding probability 8.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMEM9B-AS1:3 no no no no

Available literature

  1. Amid (2001), Comparative genomic sequencing reveals a strikingly similar architecture of a conserved syntenic region on human chromosome 11p15.3 (including gene ST5) and mouse chromosome 7., Cytogenet. Cell Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AKIP1-1:2
4.0 TMEM9B-AS1:3
4.1 TMEM9B-AS1:3
5.0 TMEM9B-AS1:3
5.1 TMEM9B-AS1:3
5.2 TMEM9B-AS1:3