Transcript: TMEM9B-AS1:16

Basic information

LNCipedia transcript ID: TMEM9B-AS1:16 
LNCipedia gene ID: TMEM9B-AS1
Location (hg38): chr11:8965022-8976796
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 11775 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000254860.1|FTMT24400000488.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.92 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMEM9B-AS1:16 no no no no

Available literature

  1. Amid (2001), Comparative genomic sequencing reveals a strikingly similar architecture of a conserved syntenic region on human chromosome 11p15.3 (including gene ST5) and mouse chromosome 7., Cytogenet. Cell Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 TMEM9B-AS1:16
5.0 TMEM9B-AS1:16
5.1 TMEM9B-AS1:16
5.2 TMEM9B-AS1:16