Transcript: TM4SF1-AS1:5

Basic information

LNCipedia transcript ID: TM4SF1-AS1:5 
HGNC Gene Symbol: TM4SF1-AS1    
HGNC Full Gene Name: TM4SF1 antisense RNA 1
Ensembl Gene ID: ENSG00000240541
Ensembl Transcript ID: ENST00000484046
Location (hg38): chr3:149378219-149386581
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 488 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005618; ENST00000484046.1; TM4SF1-AS1-002; OTTHUMT00000356366.1; NONHSAT092646
Alternative gene names: XLOC_002867; linc-TM4SF4-1; ENSG00000240541.2; TM4SF1-AS1; OTTHUMG00000159596.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 43.56% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TM4SF1-AS1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TM4SF4-1:2
3.1 lnc-TM4SF4-1:3
4.0 TM4SF1-AS1:5
4.1 TM4SF1-AS1:5
5.0 TM4SF1-AS1:5
5.1 TM4SF1-AS1:5
5.2 TM4SF1-AS1:5