Transcript: TH2LCRR:3

Basic information

LNCipedia transcript ID: TH2LCRR:3 
HGNC Gene Symbol: TH2LCRR    
HGNC Full Gene Name: T helper type 2 locus control region associated RNA
Ensembl Gene ID: ENSG00000223442
Ensembl Transcript ID: ENST00000417516
Location (hg38): chr5:132638050-132655892
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 390 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417516.1; AC004041.2-002; OTTHUMT00000132779.1; NONHSAT103766
Alternative gene names: ENSG00000223442.1; AC004041.2; OTTHUMG00000059612.2; TH2LCRR; TH2-LCR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.5913 non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TH2LCRR:3 no no no no

Available literature

  1. Spurlock (2015), Expression and functions of long noncoding RNAs during human T helper cell differentiation., Nat Commun


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIF3A-1:3
4.0 TH2LCRR:3
4.1 TH2LCRR:3
5.0 TH2LCRR:3
5.1 TH2LCRR:3
5.2 TH2LCRR:3