Transcript: TDRKH-AS1:24

Basic information

LNCipedia transcript ID: TDRKH-AS1:24 
LNCipedia gene ID: TDRKH-AS1
Location (hg38): chr1:151792708-151792921
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 603 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_1486_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.4709 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TDRKH-AS1:24 no no no no

Available literature

  1. Li (2016), Integrated bioinformatics analysis of chromatin regulator EZH2 in regulating mRNA and lncRNA expression by ChIP sequencing and RNA sequencing., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OAZ3-9:2
4.0 lnc-OAZ3-9:2
4.1 lnc-OAZ3-1:11
5.0 lnc-OAZ3-1:11
5.1 TDRKH-AS1:12
5.2 TDRKH-AS1:24