Transcript: SYNPR-AS1:1

Basic information

LNCipedia transcript ID: SYNPR-AS1:1 
LNCipedia gene ID: SYNPR-AS1
Location (hg38): chr3:63421088-63645644
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3003 bp
Exons: 4
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1006:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.996 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SYNPR-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SYNPR-AS1:1
4.1 SYNPR-AS1:1
5.0 SYNPR-AS1:1
5.1 SYNPR-AS1:1
5.2 SYNPR-AS1:1