Transcript: STAM-AS1:3

Basic information

LNCipedia transcript ID: STAM-AS1:3 
LNCipedia gene ID: STAM-AS1
Location (hg38): chr10:17641284-17643873
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2590 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260589.1|ENST00000563601.1
Alternative gene names: locus3182


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -37.2996 non-coding 
CPAT coding probability 15.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STAM-AS1:3 no no no no

Available literature

  1. Sigova (2013), Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 STAM-AS1:3
5.0 STAM-AS1:3
5.1 STAM-AS1:3
5.2 STAM-AS1:3