Transcript: ST7-AS2:6

Basic information

LNCipedia transcript ID: ST7-AS2:6 
LNCipedia gene ID: ST7-AS2
RefSeq ID: NR_109980
Location (hg38): chr7:117072072-117090781
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1352 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109980; NR_109980.1
Alternative gene names: ST7AS2; ST7-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -168.5138 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ST7-AS2:6 yes no no no

Available literature

  1. Vincent (2002), The RAY1/ST7 tumor-suppressor locus on chromosome 7q31 represents a complex multi-transcript system., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WNT2-1:8
4.0 ST7-AS2:6
4.1 ST7-AS2:6
5.0 ST7-AS2:6
5.1 ST7-AS2:6
5.2 ST7-AS2:6