Transcript: ST3GAL5-AS1:13

Basic information

LNCipedia transcript ID: ST3GAL5-AS1:13 
LNCipedia gene ID: ST3GAL5-AS1
Location (hg38): chr2:85889422-85891202
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 409 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00004837
Alternative gene names: XLOC_001558; linc-PTCD3-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -683.3351 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ST3GAL5-AS1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATOH8-1:8
3.1 lnc-ATOH8-2:8
4.0 ST3GAL5-AS1:13
4.1 ST3GAL5-AS1:13
5.0 ST3GAL5-AS1:13
5.1 ST3GAL5-AS1:13
5.2 ST3GAL5-AS1:13