Transcript: SSTR5-AS1:2

Basic information

LNCipedia transcript ID: SSTR5-AS1:2 
LNCipedia gene ID: SSTR5-AS1
Location (hg38): chr16:1064082-1078731
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2933 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT051911; NR_027242
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 75.9669 coding 
CPAT coding probability 99.90% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SSTR5-AS1:2 no no no no

Available literature

  1. Ramnarine (2018), The long noncoding RNA landscape of neuroendocrine prostate cancer and its clinical implications., Gigascience


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1QTNF8-1:6
4.0 SSTR5-AS1:2
4.1 SSTR5-AS1:2
5.0 SSTR5-AS1:2
5.1 SSTR5-AS1:2
5.2 SSTR5-AS1:2