Transcript: SSBP3-AS1:1

Basic information

LNCipedia transcript ID: SSBP3-AS1:1 
HGNC Gene Symbol: SSBP3-AS1    
HGNC Full Gene Name: SSBP3 antisense RNA 1
Ensembl Gene ID: ENSG00000198711
Ensembl Transcript ID: ENST00000361350
Location (hg38): chr1:54236440-54239063
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2624 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000361350.5
Alternative gene names: ENSG00000198711.5; SSBP3-AS1; MSTP128


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -93.6186 non-coding 
CPAT coding probability 87.46% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SSBP3-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 SSBP3-AS1:1
4.1 SSBP3-AS1:1
5.0 SSBP3-AS1:1
5.1 SSBP3-AS1:1
5.2 SSBP3-AS1:1